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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adiABiodegradative arginine decarboxylase. (768 aa)    
Predicted Functional Partners:
speA
Biosynthetic arginine decarboxylase (ADC); Catalyzes the biosynthesis of agmatine from arginine.
     
 0.918
speB
Agmatinase (agmatine ureohydrolase) (AUH); Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
    
 0.915
plu4143
Unnamed protein product; Some similarities with agmatinase SpeB (Agmatine ureohydrolase) (AUH); Belongs to the arginase family.
    
 0.915
astA
Arginine N-succinyltransferase (AOST); Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.
   
 
  0.907
plu0158
Unnamed protein product; Similar to L-arginine:lysine amidinotransferase and similar to L-arginine:glycine amidinotransferase.
     
 0.902
argH
Argininosuccinate lyase (arginosuccinase) (ASAL).
     
 0.823
ravA
ATPase RavA; Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone; Belongs to the RavA family.
   
 
 0.612
yfhD
Putative periplasmic binding transport protein YfhD; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella.
       0.501
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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