Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3324Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA. (3531 aa)    
Predicted Functional Partners:
rtxC
Cytolysin-activating lysine-acyltransferase RtxC.
 
   
 0.799
plu0634
Unnamed protein product; Similar to toxin secretion ATP-binding protein.
 
  
 0.736
plu3513
Unnamed protein product; Some similarities with heme receptor HasR.
  
 
 
 0.720
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
  
 0.703
plu3514
TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
     0.688
plu3127
Unnamed protein product; Similar to toxin secretion transporter.
 
  
 0.659
plu3125
Unnamed protein product; Similar to toxin secretion transporter.
 
  
 0.635
plu1900
Unnamed protein product; Similar to unknown protein of Photorhabdus.
  
 
 0.618
plu2057
Unnamed protein product; Some similarities with putative adhesin, invasin and intimin.
  
 
 0.618
plu2891
Unnamed protein product; Similar to unknown bacteriophage protein.
  
 
 0.618
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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