plu3362 protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plu3362

Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein. (204 aa)

Predicted Functional Partners:

plu3363

0.773

plu3604

0.459

plu3360

0.418

plu3361

0.418

plu3359

0.401

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
plu3359	plu3360	Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with succinoglycan biosynthesis glycosyltransferase.	Unnamed protein product; Hypothetical protein.	0.697
plu3359	plu3361	Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with succinoglycan biosynthesis glycosyltransferase.	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	0.698
plu3359	plu3362	Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with succinoglycan biosynthesis glycosyltransferase.	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	0.401
plu3360	plu3359	Unnamed protein product; Hypothetical protein.	Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with succinoglycan biosynthesis glycosyltransferase.	0.697
plu3360	plu3361	Unnamed protein product; Hypothetical protein.	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	0.773
plu3360	plu3362	Unnamed protein product; Hypothetical protein.	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	0.418
plu3360	plu3363	Unnamed protein product; Hypothetical protein.	Unnamed protein product; Some weak similarities with unknown protein.	0.418
plu3361	plu3359	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with succinoglycan biosynthesis glycosyltransferase.	0.698
plu3361	plu3360	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	Unnamed protein product; Hypothetical protein.	0.773
plu3361	plu3362	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	0.418
plu3361	plu3363	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	Unnamed protein product; Some weak similarities with unknown protein.	0.418
plu3362	plu3359	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with succinoglycan biosynthesis glycosyltransferase.	0.401
plu3362	plu3360	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	Unnamed protein product; Hypothetical protein.	0.418
plu3362	plu3361	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	0.418
plu3362	plu3363	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	Unnamed protein product; Some weak similarities with unknown protein.	0.773
plu3362	plu3604	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	5-formyltetrahydrofolate cyclo-ligase; Unnamed protein product; Similar to putative ligase YgfA of Escherichia coli; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.459
plu3363	plu3360	Unnamed protein product; Some weak similarities with unknown protein.	Unnamed protein product; Hypothetical protein.	0.418
plu3363	plu3361	Unnamed protein product; Some weak similarities with unknown protein.	Glycos_transf_1 domain-containing protein; Unnamed protein product; Similar to putative colanic acid biosynthesis glycosyl transferase WcaL of Escherichia coli.	0.418
plu3363	plu3362	Unnamed protein product; Some weak similarities with unknown protein.	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	0.773
plu3604	plu3362	5-formyltetrahydrofolate cyclo-ligase; Unnamed protein product; Similar to putative ligase YgfA of Escherichia coli; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	Rhomboid domain-containing protein; Unnamed protein product; Some similarities with putative membrane protein.	0.459

Server load: medium (60%) [HD]

Permalink

Network

Neighborhood

Textmining

Co-occurrence

Experiments

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About