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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idi1Isopentenyl-diphosphate Delta-isomerase 1; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (176 aa)    
Predicted Functional Partners:
ispA
Geranyltranstransferase (farnesyl-diphosphate synthase) FPP synthase); Belongs to the FPP/GGPP synthase family.
 
 
 0.929
idi2
Isopentenyl-diphosphate Delta-isomerase 2; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 
0.918
lytB
Penicillin tolerance protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.
     
 0.911
crtE
CrtE protein; Similar to geranylgeranyl pyrophosphate synthetase (GGPP synthetase); Belongs to the FPP/GGPP synthase family.
  
 
 0.910
plu3366
Unnamed protein product; Hypothetical protein.
       0.773
plu4507
APH domain-containing protein; Unnamed protein product; Some similarities with 3-hydroxy-3-methylglutaryl coenzyme A reductase.
  
  
 0.576
plu4506
Unnamed protein product; Hypothetical transmembrane protein.
  
 
 0.554
plu3364
FAD-binding PCMH-type domain-containing protein; Unnamed protein product; Some similarities with the N-terminal region of different oxydases.
  
  
 0.460
plu3368
Unnamed protein product; Weakly similar to the N-terminal region of cofactor modifying protein.
       0.443
crtB
Phytoene synthase.
 
  
 0.438
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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