Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3370Unnamed protein product; Similar to phospholipase A. (338 aa)    
Predicted Functional Partners:
plu3369
ANK_REP_REGION domain-containing protein; Unnamed protein product; Some similarities with phospholipase A accessory protein.
 
   
 0.940
plu1677
Collar domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
  
     0.728
plu1655
Collar domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
  
     0.716
plu1715
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.712
plu2947
Integrase_SAM-like_N domain-containing protein; Unnamed protein product; Similar to bacteriophage integrase; Belongs to the 'phage' integrase family.
  
     0.711
plu1718
Collar domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
  
     0.710
plu1652
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.706
plu1692
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.703
plu2399
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.698
plu3275
SseB_C domain-containing protein; Unnamed protein product; Some similarities with rhodanese-like protein SseB of Escherichia coli.
 
 0.694
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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