Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3393Unnamed protein product; Unknown protein. (135 aa)    
Predicted Functional Partners:
plu3394
Unnamed protein product; Unknown protein.
       0.800
plu3395
Unnamed protein product; Similar to unknown protein.
       0.799
plu3396
Unnamed protein product; Unknown protein.
       0.799
plu3391
Unnamed protein product; Some similarities with unknown protein.
       0.487
plu3389
Unnamed protein product; Some similarities with unknown protein of Photorhabdus.
       0.485
plu3390
Unnamed protein product; Hypothetical protein.
       0.485
plu3399
Unnamed protein product; Hypothetical protein.
       0.446
plu3392
SLT domain-containing protein; Unnamed protein product; Some similarities with the central region of structural lytic transglycosylase.
       0.444
plu3402
Unnamed protein product; Unknown protein.
       0.438
plu3400
Unnamed protein product; Hypothetical protein.
       0.435
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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