Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3406Unnamed protein product; Similar to putative prophage terminase large subunit. (418 aa)    
Predicted Functional Partners:
plu3405
Unnamed protein product; Some similarities with unknown protein.
 
     0.937
plu3403
Unnamed protein product; Weakly similar to unknown protein.
 
     0.898
plu3404
Phage_Mu_F domain-containing protein; Unnamed protein product; Weakly similar to unknown protein.
 
     0.887
plu3407
Unnamed protein product; Some similarities with putative prophage terminase small subunit.
  
  
 0.863
plu3384
Baseplate_J domain-containing protein; Unnamed protein product; Weakly similar to unknown bacteriophage protein.
 
    0.714
plu3408
Unnamed protein product; Hypothetical gene.
       0.705
plu2894
Unnamed protein product; Similar to unknown protein.
 
     0.649
plu2898
Unnamed protein product; Similar to unknown protein.
 
     0.640
plu3402
Unnamed protein product; Unknown protein.
       0.610
plu3401
Unnamed protein product; Unknown protein.
       0.609
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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