Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3413Unnamed protein product; Highly similar to cryptic prophage endopeptidase b1362. (149 aa)    
Predicted Functional Partners:
plu3414
Lysozyme; Unnamed protein product; Similar to endolysin (lysozyme, muramidase, protein GP54). Putative secreted protein.
  
    0.562
plu3415
Unnamed protein product; Similar to bacteriophage Gp13 protein.
       0.538
plu3411
Unnamed protein product; Unknown protein.
       0.507
plu3412
Unnamed protein product; Hypothetical transmembrane protein.
       0.507
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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