Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3414Lysozyme; Unnamed protein product; Similar to endolysin (lysozyme, muramidase, protein GP54). Putative secreted protein. (178 aa)    
Predicted Functional Partners:
plu3415
Unnamed protein product; Similar to bacteriophage Gp13 protein.
       0.773
ISPlu15A
Transposase, ISNCY family.
  
     0.684
plu1669
Transposase_31 domain-containing protein; Unnamed protein product; Similar to putative transposase.
  
     0.670
plu1643
Transposase_31 domain-containing protein; Unnamed protein product; Similar to putative transposase.
  
     0.668
plu3131
Transposase_31 domain-containing protein; Unnamed protein product; Similar to putative transposase.
  
     0.647
plu3212
Transposase_31 domain-containing protein; Unnamed protein product; Highly similar to putative transposase.
  
     0.647
plu1611
Transposase_31 domain-containing protein; Unnamed protein product; Similar to putative transposase.
  
     0.644
plu3811
Transposase_31 domain-containing protein; Unnamed protein product; Similar to putative transposase.
  
     0.643
plu4237
Transposase_31 domain-containing protein; C-terminal region of truncated transposase, IS630 family.
  
     0.643
plu1711
Transposase_31 domain-containing protein; Unnamed protein product; Similar to unknown protein YfaD of Escherichia coli and to putative transposase.
  
     0.633
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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