Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3421Unnamed protein product; Some similarities with lambda tail fiber assembly protein G. (150 aa)    
Predicted Functional Partners:
plu3423
Unnamed protein product; Highly similar to tail fiber protein.
  
  
 0.868
plu3422
Unnamed protein product; Similar to tail fiber protein.
  
    0.830
plu3424
Baseplate_J domain-containing protein; Unnamed protein product; Highly similar to phage-related baseplate assembly protein.
  
    0.785
plu3425
GPW_gp25 domain-containing protein; Unnamed protein product; Highly similar to baseplate protein.
  
    0.757
plu3427
Unnamed protein product; Highly similar to hypothetical protein and some similarities with bacteriophage P2 protein D (gpD).
  
    0.715
uspA
Universal stress protein A; Required for resistance to DNA-damaging agents.
  
     0.704
plu3426
Unnamed protein product; Similar to tailspike and baseplate protein.
  
    0.686
holD
DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.636
mukF
MukF protein (Killing factor kicB); Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity.
  
     0.593
rfaZ
Lipopolysaccharide core biosynthesis protein RfaZ.
  
     0.593
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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