Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3431Unnamed protein product; Highly similar to tail core protein. (174 aa)    
Predicted Functional Partners:
plu3432
Unnamed protein product; Highly similar to tail sheath protein.
 
 
 0.981
plu0010
Unnamed protein product; Similar to protein U (gpU) of Enterobacteria phage P2.
 
 
 0.965
plu0026
Unnamed protein product; Highly similar to tail protein.
 
   0.958
plu3424
Baseplate_J domain-containing protein; Unnamed protein product; Highly similar to phage-related baseplate assembly protein.
 
 
 0.957
plu3425
GPW_gp25 domain-containing protein; Unnamed protein product; Highly similar to baseplate protein.
 
 
 0.956
plu3423
Unnamed protein product; Highly similar to tail fiber protein.
 
   0.954
plu0015
Unnamed protein product; Highly similar to protein FI (gpFI) of Enterobacteria phage P2.
 
 
 0.951
plu3427
Unnamed protein product; Highly similar to hypothetical protein and some similarities with bacteriophage P2 protein D (gpD).
 
  
 0.945
plu3428
Unnamed protein product; Similar to unknown protein.
 
   0.945
plu3426
Unnamed protein product; Similar to tailspike and baseplate protein.
 
  
 0.944
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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