Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3460Unnamed protein product; Some similarities with bacteriophage protein Gp16. (119 aa)    
Predicted Functional Partners:
plu3461
Mor domain-containing protein; Unnamed protein product; Similar to DNA-binding protein RdgB which regulates pectin lyase in response to DNA damage.
 
     0.836
plu3442
Unnamed protein product; Similar to protein gp28 of Enterobacteria phage Mu.
 
    0.804
plu3435
Unnamed protein product; Weakly similar to mu-like prophage protein.
 
    0.803
plu3441
Unnamed protein product; Similar to protein gp29 of Enterobacteria phage Mu.
 
    0.802
plu3440
Phage_Mu_F domain-containing protein; Unnamed protein product; Similar to the N-terminal region of gp30 protein of Enterobacteria phage Mu.
 
     0.798
plu3458
AAA domain-containing protein; Unnamed protein product; Similar to general secretion pathway protein A.
 
     0.797
plu3457
Integrase catalytic domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
     0.796
plu3443
Unnamed protein product; Similar to gp27 protein of Enterobacteria phage Mu.
 
     0.793
plu3439
Unnamed protein product; Similar to G protein (gp31) of Enterobacteria phage Mu.
 
     0.780
plu3454
Unnamed protein product; Weakly similar to hypothetical proteins.
 
     0.776
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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