Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu3462Methyltransferase; Unnamed protein product; Similar to adenine-specific modification methylase homolog (Gp52); Belongs to the N(4)/N(6)-methyltransferase family. (157 aa)    
Predicted Functional Partners:
plu3417
Methyltransferase; Unnamed protein product; Similar to adenine-specific modification methylase homolog, a bacteriophage Gp52 protein; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.964
plu0136
DUF4942 domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.675
plu4430
Uncharacterized protein; Truncated gene. Highly similar to the central region of transposase.
  
     0.624
rfaZ
Lipopolysaccharide core biosynthesis protein RfaZ.
  
     0.532
plu3463
Unnamed protein product; Some similarities with unknown protein encoded within prophage CP-933O.
       0.529
sucC
succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
    0.434
sucD
succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
    0.434
plu0233
N6_Mtase domain-containing protein; Unnamed protein product; Similar to unknown protein and some weak similarities with deoxyribonuclease/methylase.
 
   
 0.427
plu4470
Unnamed protein product; Similar to putative integrase.
  
     0.406
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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