STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3469HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein. (399 aa)    
Predicted Functional Partners:
plu3470
Unnamed protein product; Hypothetical protein.
       0.791
plu3467
Unnamed protein product; Hypothetical gene.
       0.541
plu3468
Unnamed protein product; Similar to bacteriophage protein.
       0.541
plu3465
Unnamed protein product; Hypothetical gene.
       0.533
pilV
PilV protein; Similar to type IV prepilin PilV protein.
  
     0.475
plu0233
N6_Mtase domain-containing protein; Unnamed protein product; Similar to unknown protein and some weak similarities with deoxyribonuclease/methylase.
 
     0.458
plu3464
Unnamed protein product; Some similarities with bacteriophage Q protein.
       0.444
plu3939
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator.
 
  
0.403
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.