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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3487Unnamed protein product; Similar to bacteriophage integrase; Belongs to the 'phage' integrase family. (352 aa)    
Predicted Functional Partners:
plu2868
Unnamed protein product; Highly similar to putative ATP-dependent helicase YejH of Escherichia coli.
   
    0.806
plu4899
Sulfatase domain-containing protein; Unnamed protein product; Similar to putative membrane protein.
  
     0.673
plu2031
Unnamed protein product; Similar to unknown protein.
  
     0.519
plu2917
Unnamed protein product; Similar to bacteriophage protein, putative DNA or RNA helicases.
  
    0.490
plu2916
Prim_Zn_Ribbon domain-containing protein; Unnamed protein product; Some similarities with alpha replication protein of prophage.
 
     0.451
plu3814
MFS domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.425
plu3486
Unnamed protein product; Hypothetical gene.
       0.419
plu0461
Sulfatase domain-containing protein; Unnamed protein product; Some similarities with putative integral membrane protein.
  
     0.417
plu0340
MvaI_BcnI domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
     0.411
plu1562
tRNA_edit domain-containing protein; Unnamed protein product; Similar to unknown protein YeaK of Escherichia coli.
  
     0.411
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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