Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3494Unnamed protein product; Similar to bacteriophage protein. (499 aa)    
Predicted Functional Partners:
plu3498
Unnamed protein product; Some similarities with tail fiber protein.
 
     0.935
plu3497
Unnamed protein product; Some similarities with lambda tail fiber assembly protein G.
 
     0.808
plu3495
Unnamed protein product; Similar to unknown bacteriophage protein.
       0.779
plu3496
Unnamed protein product; Weakly similar to unknown bacteriophage protein.
       0.779
plu3493
Unnamed protein product; Hypothetical gene.
       0.773
plu4056
Uncharacterized protein; Truncated gene. Some similarities with the N-terminal region of bacteriophage protein.
 
     0.731
hicB1
Antitoxin HicB 1; Antitoxin component of a type II toxin-antitoxin (TA) system. Functions as an mRNA interferase antitoxin preventing effects of the HicA 1 toxin (By similarity).
 
     0.685
plu3036
Unnamed protein product; Similar to unknown bacteriophage protein.
  
     0.611
hicA1
Probable mRNA interferase HicA 1; Toxic component of a type II toxin-antitoxin (TA) system. A probable translation-independent mRNA interferase (By similarity). Belongs to the HicA mRNA interferase family.
       0.510
plu4699
Unnamed protein product; Similar to unknown protein YhdL of Escherichia coli.
  
     0.493
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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