Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3513Unnamed protein product; Some similarities with heme receptor HasR. (1014 aa)    
Predicted Functional Partners:
plu3514
TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
     0.870
plu3512
TonB_C domain-containing protein; Unnamed protein product; Some similarities with energy transducer TonB. Putative secreted protein.
 
 
 0.845
plu2717
TonB_C domain-containing protein; Unnamed protein product; Similar to unknown protein CjrB of Escherichia coli O164 and some similarities with inner-membrane protein TonB.
 
 
 0.766
plu3324
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
  
 
 
 0.720
plu1344
Peptidase C80 domain-containing protein; Truncated gene. Similar to C-terminal region of RTX toxin RtxA.
  
     0.693
plu0740
Unnamed protein product; Some similarities with probable transmembrane sensor.
 
  
 0.688
plu3217
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
  
     0.679
plu1341
Peptidase C80 domain-containing protein; Truncated gene. Highly similar to C-terminal region of RTX toxin RtxA.
  
     0.678
plu3926
Unnamed protein product; Some similarities with ribonuclease; Belongs to the RNase T2 family.
  
     0.673
plu0156
BAAT_C domain-containing protein; Unnamed protein product; Unknown protein.
  
     0.626
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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