Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3514TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein. (499 aa)    
Predicted Functional Partners:
plu3513
Unnamed protein product; Some similarities with heme receptor HasR.
 
     0.870
plu3515
TbpB_B_D domain-containing protein; Unnamed protein product; Weakly similar to transferrin-binding protein TfbA homolog.
       0.755
plu3324
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
 
     0.688
plu1344
Peptidase C80 domain-containing protein; Truncated gene. Similar to C-terminal region of RTX toxin RtxA.
 
     0.687
plu1341
Peptidase C80 domain-containing protein; Truncated gene. Highly similar to C-terminal region of RTX toxin RtxA.
 
     0.684
plu3217
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
  
    0.683
plu0739
STN domain-containing protein; Unnamed protein product; Similar to Outer Membrane Receptor (OMR).
 
     0.656
rtxC
Cytolysin-activating lysine-acyltransferase RtxC.
  
     0.643
groEL
60 kDa chaperonin (protein Cpn60) (GroEL protein); Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.629
plu0353
Unnamed protein product; Some similarities with putative Rhs protein.
    
   0.543
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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