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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3514TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein. (499 aa)    
Predicted Functional Partners:
plu3513
Unnamed protein product; Some similarities with heme receptor HasR.
 
   
 0.869
plu3515
TbpB_B_D domain-containing protein; Unnamed protein product; Weakly similar to transferrin-binding protein TfbA homolog.
       0.701
plu3324
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
 
     0.688
plu1344
Peptidase C80 domain-containing protein; Truncated gene. Similar to C-terminal region of RTX toxin RtxA.
 
     0.686
plu1341
Peptidase C80 domain-containing protein; Truncated gene. Highly similar to C-terminal region of RTX toxin RtxA.
 
     0.684
plu3217
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
  
    0.681
plu0739
STN domain-containing protein; Unnamed protein product; Similar to Outer Membrane Receptor (OMR).
 
   
 0.655
rtxC
Cytolysin-activating lysine-acyltransferase RtxC.
  
     0.643
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
    
 
 0.585
trxB
Thioredoxin reductase (NADPH).
  
 
 0.583
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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