Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3519Unnamed protein product; Highly similar to outer membrane receptor protein. (676 aa)    
Predicted Functional Partners:
plu2158
Unnamed protein product; Similar to hypothetical fimbrial chaperone YraI precursor of Escherichia coli.
  
     0.606
plu2156
Unnamed protein product; Similar to fimbrial adhesin precursor.
  
     0.590
plu2157
Unnamed protein product; Similar to hypothetical outer membrane usher protein YraJ precursor of Escherichia coli.
  
     0.589
plu3520
Unnamed protein product; Weakly similar to hypothetical protein.
  
  
 0.582
plu0267
Unnamed protein product; Similar to putative fimbrial chaperone.
  
     0.569
phfD
PhfD protein; Similar to outer membrane usher protein precursor.
  
     0.563
plu0783
Unnamed protein product; Similar to putative fimbrial chaperone.
  
     0.549
phfC
PhfC protein; Similar to putative fimbrial chaperone.
  
     0.545
plu0790
Unnamed protein product; Weakly similar to putative fimbrial chaperone.
  
     0.538
tonB
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.510
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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