STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3533Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotics biosynthesis (NosC, gramidin S synthetase II, tyrocidine synthetase III...); Belongs to the ATP-dependent AMP-binding enzyme family. (1133 aa)    
Predicted Functional Partners:
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
0.988
plu1885
PKS_KS domain-containing protein; Unnamed protein product; Similar to polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.976
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
 
0.969
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
 
 
 0.965
nuoC
NADH dehydrogenase I chain C/D (NADH-ubiquinone oxidoreductase chain 3/4) (NUO3/NUO4); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 0.953
plu1218
ATP-grasp domain-containing protein; Unnamed protein product; Some similarities with putative ligase/carboxylase.
 
 
 0.942
plu1216
MbtH domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
 
 0.933
plu3919
Carrier domain-containing protein; Unnamed protein product; Some similarities with polyketide synthase and peptide synthetase.
  
 0.916
plu3530
Unnamed protein product; Similar to ATP-binding component (IM-ABC) of ABC transport system.
 
  
 0.908
plu3532
Unnamed protein product; Similar to proteins involved in antibiotics biosynthesis (NosC, tyrocidine synthetase III, gramicidin S synthetase II...).
 
  
0.887
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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