Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3544HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to probable transcription regulator. (323 aa)    
Predicted Functional Partners:
plu4298
HD_domain domain-containing protein; Unnamed protein product; Similar to unknown protein and some similarities with cyanamide hydratase.
 
     0.582
plu3545
DJ-1_PfpI domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
    
0.578
plu1810
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcription regulator.
 
 
 0.498
nadR
Transcriptional regulator NadR.
   
    0.405
plu4185
HTH_11 domain-containing protein; Unnamed protein product; Some similarities with hypothetical proteins.
  
     0.404
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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