Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dsbC | fldB | plu3551 | plu3553 | Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Flavodoxin 2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | 0.575 |
| dsbC | prfB | plu3551 | plu3549 | Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Peptide chain release factor 2 (RF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.452 |
| dsbC | recJ | plu3551 | plu3550 | Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Single-stranded-DNA-specific exonuclease RecJ. | 0.800 |
| dsbC | xerD | plu3551 | plu3552 | Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.783 |
| fldB | dsbC | plu3553 | plu3551 | Flavodoxin 2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.575 |
| fldB | recJ | plu3553 | plu3550 | Flavodoxin 2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | Single-stranded-DNA-specific exonuclease RecJ. | 0.627 |
| fldB | xerD | plu3553 | plu3552 | Flavodoxin 2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.559 |
| plu1029 | xerD | plu1029 | plu3552 | Unnamed protein product; Some similarities with integrase; Belongs to the 'phage' integrase family. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.502 |
| plu1166 | plu4792 | plu1166 | plu4792 | Unnamed protein product; Similar to XerC integrase; Belongs to the 'phage' integrase family. | Phage_integrase domain-containing protein; Unnamed protein product; Highly similar to the C-terminal region of Int protein. | 0.404 |
| plu1166 | xerD | plu1166 | plu3552 | Unnamed protein product; Similar to XerC integrase; Belongs to the 'phage' integrase family. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.555 |
| plu4790 | xerD | plu4790 | plu3552 | Phage_integrase domain-containing protein; Unnamed protein product; Similar to bacteriophage integrase. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.474 |
| plu4792 | plu1166 | plu4792 | plu1166 | Phage_integrase domain-containing protein; Unnamed protein product; Highly similar to the C-terminal region of Int protein. | Unnamed protein product; Similar to XerC integrase; Belongs to the 'phage' integrase family. | 0.404 |
| plu4792 | xerD | plu4792 | plu3552 | Phage_integrase domain-containing protein; Unnamed protein product; Highly similar to the C-terminal region of Int protein. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.637 |
| prfB | dsbC | plu3549 | plu3551 | Peptide chain release factor 2 (RF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.452 |
| prfB | recJ | plu3549 | plu3550 | Peptide chain release factor 2 (RF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Single-stranded-DNA-specific exonuclease RecJ. | 0.552 |
| prfB | xerD | plu3549 | plu3552 | Peptide chain release factor 2 (RF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.407 |
| recJ | dsbC | plu3550 | plu3551 | Single-stranded-DNA-specific exonuclease RecJ. | Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.800 |
| recJ | fldB | plu3550 | plu3553 | Single-stranded-DNA-specific exonuclease RecJ. | Flavodoxin 2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. | 0.627 |
| recJ | prfB | plu3550 | plu3549 | Single-stranded-DNA-specific exonuclease RecJ. | Peptide chain release factor 2 (RF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.552 |
| recJ | xerD | plu3550 | plu3552 | Single-stranded-DNA-specific exonuclease RecJ. | Integrase/recombinase xerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges [...] | 0.744 |
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