Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3564Unnamed protein product; Weakly similar to PapB protein and to chorismate mutase/prephenate dehydrogenase. (119 aa)    
Predicted Functional Partners:
plu3562
Unnamed protein product; Similar to dehydrogenase PapC of Streptomyces pristinaespiralis.
 
  
 0.849
plu3563
Glutamine amidotransferase type-1 domain-containing protein; Unnamed protein product; Similar to p-aminobenzoic acid synthase.
  
  
 0.828
plu3561
MFS domain-containing protein; Unnamed protein product; Similar to proton antiporter efflux pump. Putative transmembrane protein.
       0.773
tyrA
T-protein [includes: chorismate mutase (CM); prephenate dehydrogenase (PDH)].
 
 
 0.649
plu3567
DAO domain-containing protein; Unnamed protein product; Similar to N-formimidoyl fortimicin A synthase.
       0.643
plu3565
Aminotran_1_2 domain-containing protein; Unnamed protein product; Similar to class II aminotransferase and 5-aminolevulinic acid synthase.
       0.639
plu3566
MTS domain-containing protein; Unnamed protein product; Similar to putative methylase and with protoporphyrinogen oxidase.
       0.628
pheA
P-protein [includes: chorismate mutase (CM); prephenate dehydratase (PDT)].
  
 
 0.536
rpmC
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
    0.511
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
  
    0.500
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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