Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3590Unnamed protein product; Some similarities with transcriptional regulator. (128 aa)    
Predicted Functional Partners:
plu3589
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
 
     0.694
plu3588
Unnamed protein product; Similar to integrase/recombinase.
 
     0.610
plu3591
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some weak similarities with unknown protein YjiW of Escherichia coli.
       0.539
plu0545
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein of Bacteriophage.
  
     0.468
plu1137
Unnamed protein product; Similar to phage transcriptional repressor.
  
     0.468
plu1146
Unnamed protein product; Similar to phage transcriptional repressor.
  
     0.468
plu3706
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to phage transcriptional repressor.
  
     0.459
plu3715
Unnamed protein product; Similar to phage transcriptional repressor.
  
     0.459
plu1127
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to phage transcriptional repressor.
  
     0.414
plu1363
Truncated gene. Weakly similar to N-terminal region of DNA primase.
  
     0.414
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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