Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3616UPF0231 protein plu3616; Unnamed protein product; Similar to unknown protein YacL of Escherichia coli; Belongs to the UPF0231 family. (123 aa)    
Predicted Functional Partners:
plu2088
Unnamed protein product; Similar to putative lipoprotein YceB of Escherichia coli.
  
     0.768
plu4737
Unnamed protein product; Similar to unknown protein YijD of Escherichia coli.
  
     0.740
plu1173
Unnamed protein product; Highly similar to unknown protein YggN of Escherichia coli.
  
     0.726
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
  
     0.722
plu2087
Unnamed protein product; Similar to putative oxidoreductase component YcdY of Escherichia coli.
  
     0.703
plu1386
Unnamed protein product; Similar to putative lipoprotein precursor YfeY protein of Escherichia coli.
  
     0.698
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
  
     0.682
plu0306
Unnamed protein product; Similar to unknown protein YhjJ precursor of Escherichia coli.
  
     0.668
plu0844
Unnamed protein product; Similar to unknown protein YacC of Escherichia coli.
  
     0.663
plu1423
Unnamed protein product; Similar to unknown protein YbfA of Escherichia coli.
  
     0.649
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.