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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppdDPrepilin peptidase dependent protein D precursor. (140 aa)    
Predicted Functional Partners:
hofC
Protein transport protein HofC.
 
   
 0.711
hofB
Protein transport protein HofB.
  
 0.645
plu3602
UPF0149 protein plu3602; Unnamed protein product; Similar to unknown protein YgfB of Escherichia coli; Belongs to the UPF0149 family.
  
     0.644
plu1378
TPR_21 domain-containing protein; Unnamed protein product; Similar to unknown protein YfgM of Escherichia coli.
  
     0.584
nadC
Nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase); Belongs to the NadC/ModD family.
  
    0.534
plu0091
Secretin_N domain-containing protein; Unnamed protein product; Some similarities with protein transport protein HofQ precursor of Escherichia coli.
 
   
 0.507
plu4771
Unnamed protein product; Similar to unknown protein YiiQ precursor of Escherichia coli.
  
     0.461
sspB
Stringent starvation protein B.
  
     0.431
ppdB
Prepilin peptidase dependent protein B precursor.
 
   
 0.419
nlpB
Lipoprotein-34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.408
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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