Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3668Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin. (421 aa)    
Predicted Functional Partners:
plu0634
Unnamed protein product; Similar to toxin secretion ATP-binding protein.
 
  
 0.826
plu3125
Unnamed protein product; Similar to toxin secretion transporter.
 
  
 0.817
rtxB
RTX toxin ABC transporter (IM-ABC) protein RtxB.
 
  
 0.812
plu3127
Unnamed protein product; Similar to toxin secretion transporter.
 
  
 0.812
plu1331
Unnamed protein product; Similar to unknown protein VC1446 of Vibrio cholerae, probable RTX toxin ABC transporter (IM-ABC) protein.
 
  
 0.811
plu3669
TPR_REGION domain-containing protein; Unnamed protein product; Weakly similar to unknown protein. Putative secreted protein.
  
  
 0.788
inh
Proteinase inhibitor Inh precursor; Inhibitor of the alkaline protease.
  
 
 0.786
plu0635
Unnamed protein product; Similar to hemolysin export system membrane fusion protein HlyD of Escherichia coli (hemolysin secretion protein D).
 
  
 0.764
rtxD
RTX toxin ABC transporter protein (MFP) RtxD.
 
  
 0.757
plu3126
Unnamed protein product; Similar to toxin secretion transporter (Membrane Fusion Protein (MFP)).
 
  
 0.755
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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