STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
speBAgmatinase (agmatine ureohydrolase) (AUH); Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily. (307 aa)    
Predicted Functional Partners:
speA
Biosynthetic arginine decarboxylase (ADC); Catalyzes the biosynthesis of agmatine from arginine.
 
 
 0.969
speE
Spermidine synthase (putrescine aminopropyltransferase); Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.939
plu4143
Unnamed protein product; Some similarities with agmatinase SpeB (Agmatine ureohydrolase) (AUH); Belongs to the arginase family.
  
  
 
0.929
adiA
Biodegradative arginine decarboxylase.
    
 0.917
speG
Spermidine N1-acetyltransferase (diamine acetyltransferase).
     
 0.906
plu3536
N-acetyltransferase domain-containing protein; Unnamed protein product; Some similarities with spermidine acetyltransferase.
    
  0.901
plu4287
DAO domain-containing protein; Unnamed protein product; Highly similar to probable oxidoreductase.
 
  
 0.537
plu2234
Unnamed protein product; Similar to histidine ammonia-lyase.
 
  
 0.523
plu2345
DAO domain-containing protein; Unnamed protein product; Some similarities with probable oxidoreductase. Hypothetical transmembrane secreted protein.
 
  
 0.507
fadJ
Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.473
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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