Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu3706HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to phage transcriptional repressor. (120 aa)    
Predicted Functional Partners:
plu3705
ZnF_CHCC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
 
     0.842
plu1144
Unnamed protein product.
  
     0.724
plu3714
ZnF_CHCC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.675
plu1126
ZnF_CHCC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.674
plu3689
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.674
plu3697
ZnF_CHCC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.674
plu3580
ZnF_CHCC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.668
plu3589
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.668
plu0544
ZnF_CHCC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.667
plu1136
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
  
     0.667
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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