Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wzbLow molecular weight protein-tyrosine-phosphatase Wzb. (142 aa)    
Predicted Functional Partners:
wzc
Tyrosine-protein kinase Wzc.
 
 
 0.985
plu3745
Unnamed protein product; Similar to putative polysaccharide export protein YccZ precursor.
  
 0.969
plu1526
Oxidored_FMN domain-containing protein; Unnamed protein product; Similar to oxidoreductase (N-ethylmaleimide reductase, nemA gene product of Escherichia coli and morphinone reductase).
   
  
 0.625
tccC3
Insecticidal toxin complex protein TccC3.
      
 0.622
rho
Transcription termination factor; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
     
 0.586
copA
Copper-transporting P-type ATPase.
  
  
 0.560
tccC2
Insecticidal toxin complex protein TccC2.
      
 0.540
narP
Nitrate/nitrite response regulator protein NarP.
      
 0.540
tldD
TldD protein, suppresses the inhibitory activity of the carbon storage regulator (CSRA).
      
 0.534
hflC
Lambda CII stability-governing protein HflC; HflC and HflK could regulate a protease.
  
    0.533
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (18%) [HD]