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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3756Unnamed protein product; Similar to translocator proteins YopB and PepB. (392 aa)    
Predicted Functional Partners:
plu3757
TPR_REGION domain-containing protein; Unnamed protein product; Similar to low calcium response locus protein H LcrH.
  
 
 0.966
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
  
  
 0.962
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
  
  
 0.932
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
  
  
 0.905
plu3753
Unnamed protein product; Similar to the exoenzyme S synthesis protein C precursor ExsC.
  
  
 0.884
plu3759
Unnamed protein product; Similar to the regulator in type III secretion LcrG and PcrG.
  
  
 0.884
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
  
  
 0.826
sctJ
Type III secretion component protein SctJ; Similar to Yop proteins translocation protein J.
  
  
 0.821
sctX
Similar to unknown protein YscX in type III secretion.
  
    0.733
plu3751
Unnamed protein product; Some similarities with lipoprotein VirG.
       0.721
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.