Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3759Unnamed protein product; Similar to the regulator in type III secretion LcrG and PcrG. (92 aa)    
Predicted Functional Partners:
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
  
  
 0.920
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
  
  
 0.920
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
  
  
 0.919
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
  
  
 0.906
sctX
Similar to unknown protein YscX in type III secretion.
  
    0.866
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
  
  
 0.844
plu3760
Unnamed protein product; Similar to transcription regulator proteins LcrR and PcrR.
  
    0.827
plu3757
TPR_REGION domain-containing protein; Unnamed protein product; Similar to low calcium response locus protein H LcrH.
  
  
 0.813
plu3753
Unnamed protein product; Similar to the exoenzyme S synthesis protein C precursor ExsC.
  
  
 0.776
sctO
Type III secretion component protein SctO; Similar to Yop proteins translocation protein O.
  
  
 0.748
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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