Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3760Unnamed protein product; Similar to transcription regulator proteins LcrR and PcrR. (144 aa)    
Predicted Functional Partners:
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
  
  
 0.909
sctX
Similar to unknown protein YscX in type III secretion.
  
    0.846
plu3759
Unnamed protein product; Similar to the regulator in type III secretion LcrG and PcrG.
  
    0.827
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
  
  
 0.815
sctY
Similar to putative type III secretion protein YscY.
       0.812
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
  
  
 0.803
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
  
  
 0.725
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
  
    0.722
plu3757
TPR_REGION domain-containing protein; Unnamed protein product; Similar to low calcium response locus protein H LcrH.
  
    0.679
plu3753
Unnamed protein product; Similar to the exoenzyme S synthesis protein C precursor ExsC.
     
 0.639
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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