Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sctYSimilar to putative type III secretion protein YscY. (109 aa)    
Predicted Functional Partners:
sctX
Similar to unknown protein YscX in type III secretion.
     
 0.926
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
     
 0.925
plu3760
Unnamed protein product; Similar to transcription regulator proteins LcrR and PcrR.
       0.812
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
       0.665
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
       0.665
plu3759
Unnamed protein product; Similar to the regulator in type III secretion LcrG and PcrG.
       0.665
plu3757
TPR_REGION domain-containing protein; Unnamed protein product; Similar to low calcium response locus protein H LcrH.
       0.661
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
       0.655
plu3753
Unnamed protein product; Similar to the exoenzyme S synthesis protein C precursor ExsC.
     
 0.635
sctF
Type III secretion component protein SctF; Similar to Yop proteins translocation protein F.
      
 0.622
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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