STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctXSimilar to unknown protein YscX in type III secretion. (121 aa)    
Predicted Functional Partners:
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
  
    0.880
plu3759
Unnamed protein product; Similar to the regulator in type III secretion LcrG and PcrG.
  
    0.837
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
  
    0.818
plu3760
Unnamed protein product; Similar to transcription regulator proteins LcrR and PcrR.
  
    0.813
sctY
Similar to putative type III secretion protein YscY.
       0.791
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
  
    0.748
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
  
    0.733
plu3757
TPR_REGION domain-containing protein; Unnamed protein product; Similar to low calcium response locus protein H LcrH.
  
    0.696
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
  
    0.689
plu3764
Unnamed protein product; Similar to YopN chaperone SycN.
  
    0.655
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.