Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sctXSimilar to unknown protein YscX in type III secretion. (121 aa)    
Predicted Functional Partners:
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
  
  
 0.954
sctY
Similar to putative type III secretion protein YscY.
     
 0.926
plu3759
Unnamed protein product; Similar to the regulator in type III secretion LcrG and PcrG.
  
    0.866
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
  
    0.852
plu3760
Unnamed protein product; Similar to transcription regulator proteins LcrR and PcrR.
  
    0.846
sctI
Type III secretion component protein SctI; Similar to Yop proteins translocation protein I.
   
  
 0.808
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
  
    0.787
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
  
    0.774
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
  
    0.761
plu3757
TPR_REGION domain-containing protein; Unnamed protein product; Similar to low calcium response locus protein H LcrH.
  
    0.699
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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