Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu3765TyeA domain-containing protein; Unnamed protein product; Similar to secretion and targeting control protein, TyeA. (95 aa)    
Predicted Functional Partners:
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
       0.800
sctY
Similar to putative type III secretion protein YscY.
       0.460
sctX
Similar to unknown protein YscX in type III secretion.
       0.460
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
       0.458
plu3760
Unnamed protein product; Similar to transcription regulator proteins LcrR and PcrR.
       0.447
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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