Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sctPType III secretion component protein SctP; Similar to Yop proteins translocation protein P. (376 aa)    
Predicted Functional Partners:
sctQ
Type III secretion component protein SctQ; Similar to Yop proteins translocation protein Q.
       0.779
sctN
Type III secretion component protein SctN; Similar to Yops secretion ATPase.
       0.752
sctO
Type III secretion component protein SctO; Similar to Yop proteins translocation protein O.
       0.752
sctC
Type III secretion component protein SctC; Similar to Yop proteins translocation protein C.
      
 0.670
slyA
Transcriptional regulator protein SlyA; Transcription regulator that can specifically activate or repress expression of target genes. Regulates the cpm operon, which contains cpmA, cpmB, cpmC, cpmD, cpmE, cpmF, cpmG and cpmH, involved in carbapenem-like antibiotic production; Belongs to the SlyA family.
      
 0.598
hpaA
Regulator of the 4HPA-hydroxylase operon.
      
 0.551
tciR2
TciR2 protein; Similar to LysR-type transcriptional activator; Belongs to the LysR transcriptional regulatory family.
      
 0.540
xre
Antitoxin Xre; Antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the NAD(+) depleting activity of cognate toxin Res.
      
 0.540
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
      
 0.540
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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