Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sctSType III secretion component protein SctS; Similar to Yop proteins translocation protein S. (88 aa)    
Predicted Functional Partners:
sctT
Type III secretion component protein SctT; Similar to Yop proteins translocation protein T.
 
 
 0.998
sctR
Type III secretion component protein SctR; Similar to Yop proteins translocation protein R.
 
 
 0.995
sctJ
Type III secretion component protein SctJ; Similar to Yop proteins translocation protein J.
 
 
 0.992
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
 
 
 0.986
sctC
Type III secretion component protein SctC; Similar to Yop proteins translocation protein C.
 
 
 0.986
sctQ
Type III secretion component protein SctQ; Similar to Yop proteins translocation protein Q.
 
  
 0.952
sctN
Type III secretion component protein SctN; Similar to Yops secretion ATPase.
 
  
 0.950
sctU
Type III secretion component protein SctU; Highly similar to Yop proteins translocation protein U.
 
  
 0.946
sctL
Type III secretion component protein SctL; Similar to Yop proteins translocation protein L.
 
  
 0.929
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
 
    0.893
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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