Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3776Unnamed protein product; Similar to ExsD protein of Pseudomonas aeruginosa. (277 aa)    
Predicted Functional Partners:
sctB
Type III secretion component protein SctB; Similar to the Yop proteins translocation protein B.
       0.779
plu3753
Unnamed protein product; Similar to the exoenzyme S synthesis protein C precursor ExsC.
   
 
 0.698
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
   
  
 0.694
sctI
Type III secretion component protein SctI; Similar to Yop proteins translocation protein I.
  
    0.682
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
   
  
 0.609
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
   
  
 0.580
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
   
  
 0.572
plu3759
Unnamed protein product; Similar to the regulator in type III secretion LcrG and PcrG.
   
  
 0.570
sctF
Type III secretion component protein SctF; Similar to Yop proteins translocation protein F.
  
  
 0.562
plu3775
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to the transcriptional activator protein ExsA/VirF.
  
   0.556
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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