STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctIType III secretion component protein SctI; Similar to Yop proteins translocation protein I. (112 aa)    
Predicted Functional Partners:
sctJ
Type III secretion component protein SctJ; Similar to Yop proteins translocation protein J.
  
  
 0.923
sctF
Type III secretion component protein SctF; Similar to Yop proteins translocation protein F.
  
  
 0.768
sctG
Type III secretion component protein SctG; Similar to Yop proteins translocation protein G.
  
    0.733
plu3758
Unnamed protein product; Similar to the virulence-associated V antigen, LcrV protein (low calcium response locus protein V).
   
  
 0.615
plu3755
Unnamed protein product; Similar to translocator proteins YopD and PepD.
   
  
 0.580
sctH
Type III secretion component protein SctH; Similar to Yop proteins translocation protein H.
       0.580
plu3776
Unnamed protein product; Similar to ExsD protein of Pseudomonas aeruginosa.
  
    0.567
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
   
  
 0.526
sctL
Type III secretion component protein SctL; Similar to Yop proteins translocation protein L.
  
  
 0.523
sctK
Type III secretion component protein SctK; Similar to Yop proteins translocation protein K.
  
    0.503
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.