STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctKType III secretion component protein SctK; Similar to Yop proteins translocation protein K. (208 aa)    
Predicted Functional Partners:
sctL
Type III secretion component protein SctL; Similar to Yop proteins translocation protein L.
  
  
 0.828
sctJ
Type III secretion component protein SctJ; Similar to Yop proteins translocation protein J.
  
    0.757
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
   
    0.681
sctS
Type III secretion component protein SctS; Similar to Yop proteins translocation protein S.
   
    0.677
sctO
Type III secretion component protein SctO; Similar to Yop proteins translocation protein O.
   
    0.673
plu3764
Unnamed protein product; Similar to YopN chaperone SycN.
   
    0.652
sctG
Type III secretion component protein SctG; Similar to Yop proteins translocation protein G.
  
  
 0.643
sctQ
Type III secretion component protein SctQ; Similar to Yop proteins translocation protein Q.
   
  
 0.623
sctI
Type III secretion component protein SctI; Similar to Yop proteins translocation protein I.
  
    0.612
sctT
Type III secretion component protein SctT; Similar to Yop proteins translocation protein T.
   
    0.537
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.