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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctLType III secretion component protein SctL; Similar to Yop proteins translocation protein L. (205 aa)    
Predicted Functional Partners:
sctJ
Type III secretion component protein SctJ; Similar to Yop proteins translocation protein J.
 
  
 0.971
sctN
Type III secretion component protein SctN; Similar to Yops secretion ATPase.
 
 
 0.960
sctQ
Type III secretion component protein SctQ; Similar to Yop proteins translocation protein Q.
 
 
 0.954
flgJ
Peptidoglycan hydrolase FlgJ (Muramidase flgJ).
  
  
 0.952
sctW
Similar to outer membrane, secretion control protein N, YopN (LcrE).
 
  
 0.945
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
 
  
 0.929
sctS
Type III secretion component protein SctS; Similar to Yop proteins translocation protein S.
 
  
 0.927
sctT
Type III secretion component protein SctT; Similar to Yop proteins translocation protein T.
 
  
 0.920
fliI
Flagellum-specific ATP synthase.
 
 
 0.887
sctU
Type III secretion component protein SctU; Highly similar to Yop proteins translocation protein U.
 
  
 0.880
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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