Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu3797Unnamed protein product; Similar to unknown proteins of Photorhabdus luminescens and some similarities with Hemolysin of Fusobacterium nucleatum subsp. nucleatum. (359 aa)    
Predicted Functional Partners:
plu3798
Sigma-54 factor interaction domain-containing protein; Unnamed protein product; Similar to the central region of response regulator of AtoC, ornithine/arginine decarboxylase inhibitor (ornithine decarboxylase antizyme).
       0.438
atoD
Acetate CoA-transferase alpha subunit (acetyl-CoA:acetoacetate CoA transferase alpha subunit).
       0.438
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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