Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3801TauD domain-containing protein; Unnamed protein product; Weakly similar to putative oxygenase. (334 aa)    
Predicted Functional Partners:
plu3802
Unnamed protein product; Similar to unknown protein.
  
    0.779
plu2005
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator, LuxR family.
  
     0.580
plu2010
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator, LuxR family.
  
     0.549
plu2006
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator, LuxR family.
  
     0.533
plu2015
HTH luxR-type domain-containing protein; Unnamed protein product; Weakly similar to transcriptional regulator, LuxR family.
  
     0.531
plu0922
HTH luxR-type domain-containing protein; Unnamed protein product; Weakly similar to transcriptional regulator, LuxR family.
  
     0.530
plu3227
DUF2235 domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.529
plu3241
DUF2235 domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.526
plu3220
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to probable transcription regulator, LuxR family.
  
     0.525
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
  
 0.523
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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