Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tesAAcyl-CoA thioesterase I precursor (Protease I) (Lysophospholipase L1) (Lecithinase B). (211 aa)    
Predicted Functional Partners:
ybbP
Probable ABC transporter permease protein YbbP.
 
 
   0.967
ybbA
Probable ABC transporter ATP-binding protein YbbA.
 
 
   0.935
plu3819
Unnamed protein product; Highly similar to hypothetical oxidoreductase YbbO of Escherichia coli; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.771
plu3821
PHB domain-containing protein; Unnamed protein product; Similar to putative protease YbbK of Escherichia coli.
       0.560
plu3820
Unnamed protein product; Similar to putative thioredoxin-like protein YbbN of Escherichia coli.
       0.522
tesB
acyl-CoA thioesterase II (TEII).
      
 0.497
greB
Transcription elongation factor (transcript cleavage factor); Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
 
     0.426
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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