Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mdlBMultidrug resistance-like ATP-binding protein. (594 aa)    
Predicted Functional Partners:
mdlA
Multidrug resistance-like ATP-binding protein.
 
 
 
0.983
metN
D-methionine transport ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.791
plu3860
HTH asnC-type domain-containing protein; Unnamed protein product; Highly similar to transcriptional regulator AsnC-family YbaO of Escherichia coli.
  
    0.579
plu4486
Unnamed protein product; Similar to amino acid ABC transporter (ATP-binding protein).
 
     
0.578
plu4502
DUF1471 domain-containing protein; Unnamed protein product; Similar to unknown protein YbiJ precursor of Escherichia coli.
  
     0.566
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.552
smp
Protein Smp precursor.
  
     0.544
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
  
 
 0.541
amtB
Probable ammonium transport protein AmtB.
   
   0.506
glnK
Nitrogen regulatory protein P-II 2; Belongs to the P(II) protein family.
       0.473
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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