Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3864Unnamed protein product; Similar to unknown protein YbaV of Escherichia coli. (124 aa)    
Predicted Functional Partners:
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
  
  
 0.752
queF
NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.657
ppiD
Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D).
       0.629
plu4686
MCM domain-containing protein; Unnamed protein product; Highly similar to unknown protein YifB of Escherichia coli (putative magnesium chelatase family protein).
  
  
 0.596
hofC
Protein transport protein HofC.
  
  
 0.520
pilU
PilU protein; Similar to prepilin peptidase PilU protein.
   
  
 0.506
plu1186
Peptidase_A24 domain-containing protein; Unnamed protein product; Similar to type IV prepilin peptidase; Belongs to the peptidase A24 family.
   
  
 0.506
plu1733
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.506
plu1834
Unnamed protein product; Some weak similarities with unknown protein.
   
  
 0.500
plu3863
4HBT domain-containing protein; Unnamed protein product; Similar to unknown protein YbaW of Escherichia coli.
       0.499
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.