Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3890Unnamed protein product; Similar to putative acetyltransferase. (174 aa)    
Predicted Functional Partners:
plu3889
Unnamed protein product; Highly similar to unknown protein.
 
 
   0.954
plu0180
Unnamed protein product; Similar to unknown protein of Escherichia coli O157:H7.
 
 
 
 0.885
plu0861
Unnamed protein product; Similar to unknown protein.
 
 
 
 0.883
plu2651
Unnamed protein product; Some similarities with unknown protein.
 
 
   0.802
plu1617
Unnamed protein product; Similar to unknown protein.
 
 
   0.787
plu0959
Unnamed protein product; Similar to unknown protein.
 
 
   0.780
plu3888
Unnamed protein product; Hypothetical gene.
       0.773
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
     
 0.414
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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