Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3894Uncharacterized protein; Truncated gene. Some similarities with unknown protein. (90 aa)    
Predicted Functional Partners:
plu1326
Unnamed protein product; Similar to unknown protein YafQ of Escherichia coli.
 
 
 0.963
plu0808
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.625
plu4781
Unnamed protein product; Similar to unknown protein.
 
     0.527
plu4196
Unnamed protein product; Similar to unknown protein.
 
     0.483
plu4467
Unnamed protein product; Similar to unknown protein.
  
   
 0.481
plu2365
Unnamed protein product; Highly similar to plasmid stable inheritance protein K.
 
   
 0.479
plu2366
SpoVT-AbrB domain-containing protein; Unnamed protein product; Highly similar to plasmid stable inheritance protein I.
  
   
 0.450
plu4592
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
   
 0.436
pgpA
Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
       0.416
thiL
Thiamine-monophosphate kinase (thiamine-phosphate kinase); Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.416
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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