Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3916Unnamed protein product; Similar to creatininase (creatinine amidohydrolase). (256 aa)    
Predicted Functional Partners:
plu0158
Unnamed protein product; Similar to L-arginine:lysine amidinotransferase and similar to L-arginine:glycine amidinotransferase.
     
  0.900
plu3917
DHO_dh domain-containing protein; Catalyzes the conversion of dihydroorotate to orotate.
       0.784
plu3918
Unnamed protein product; Hypothetical protein.
       0.537
plu3020
Unnamed protein product; Hypothetical protein.
  
  
 0.505
plu3359
Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with succinoglycan biosynthesis glycosyltransferase.
  
  
 0.505
wblJ
WblJ protein; Some similarities with glucosyltransferases.
  
  
 0.505
wblT
WblT protein; Some similarities with exopolysaccharide biosynthesis protein.
  
  
 0.505
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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